Blastococcus atacamensis sp. nov., a novel strain adapted to life in the Yungay core region of the Atacama Desert

Castro, Jean Franco, Nouioui, Imen, Sangal, Vartul, Choi, Seonbin, Yang, Seung-Jo, Kim, Byung-Yong, Trujillo, Martha, Riesco, Raul, Montero-Calasanz, Maria del Carmen, Rahmani, Tara, Bull, Alan, Sutcliffe, Iain, Asenjo, Juan, Andrews, Barbara and Goodfellow, Michael (2018) Blastococcus atacamensis sp. nov., a novel strain adapted to life in the Yungay core region of the Atacama Desert. International Journal of Systematic and Evolutionary Microbiology. ISSN 1466-5026

[img] Text (Full text)
Castro et al - Blastococcus atacamensis AAM.pdf - Accepted Version
Restricted to Repository staff only until 3 July 2019.

Download (953kB)
Official URL: http://dx.doi.org/10.1099/ijsem.0.002828

Abstract

A polyphasic study was undertaken to establish the taxonomic status of a Blastococcus strain isolated from an extreme hyper-arid Atacama Desert soil. The isolate, strain P6T, was found to have chemotaxonomic and morphological properties consistent with its classification in the genus Blastococcus . It was shown to form a well-supported branch in the Blastococcus 16S rRNA gene tree together with the type strains of Blastococcus capsensis and Blastococcus saxobsidens and was distinguished from the latter, its close phylogenetic neighbour, by a broad range of phenotypic properties. The draft genome sequence of isolate P6T showed 84.6 % average nucleotide identity, 83.0 % average amino acid identity and a digital DNA–DNA hybridisation value of 27.8 % in comparison with the genome sequence of B. saxobsidens DSM 44509T, values consistent with its assignment to a separate species. Based on these data it is proposed that isolate P6T (NCIMB 15090T=NRRL B-65468T) be assigned to the genus Blastococcus as Blastococcus atacamensis sp. nov. Analysis of the whole genome sequence of B. atacamensis P6T, with 3778 open reading frames and a genome size of 3.9 Mb showed the presence of genes and gene clusters that encode for properties that reflect its adaptation to the extreme environmental conditions that prevail in Atacama Desert soils.

Item Type: Article
Uncontrolled Keywords: stress and biosynthetic genes, polyphasic taxonomy, whole-genome sequences
Subjects: C400 Genetics
Department: Faculties > Health and Life Sciences > Applied Sciences
Depositing User: Becky Skoyles
Date Deposited: 13 Jul 2018 07:35
Last Modified: 11 Dec 2018 13:16
URI: http://nrl.northumbria.ac.uk/id/eprint/34970

Actions (login required)

View Item View Item

Downloads

Downloads per month over past year

View more statistics


Policies: NRL Policies | NRL University Deposit Policy | NRL Deposit Licence