Items where Author is "Cummings, Stephen"

Article

Young, Greg, Berrington, Janet E., Cummings, Stephen, Dorling, Jon, Ewer, Andrew K., Frau, Alessandra, Lett, Lauren, Probert, Chris, Juszczak, Ed, Kirby, John, Beck, Lauren C., Renwick, Victoria L., Lamb, Christopher, Lanyon, Clare, McGuire, William, Stewart, Christopher and Embleton, Nicholas (2023) Mechanisms affecting the gut of preterm infants in enteral feeding trials: a nested cohort within a randomised controlled trial of lactoferrin. Archives of Disease in Childhood - Fetal and Neonatal Edition, 108 (3). pp. 272-279. ISSN 1359-2998

Al-Momani, Hafez, Perry, Audrey, Nelson, Andrew, Stewart, Christopher J., Jones, Rhys, Krishnan, Amaran, Robertson, Andrew, Bourke, Stephen, Doe, Simon, Cummings, Stephen, Anderson, Alan, Forrest, Tara, Forrest, Ian, Griffin, Michael, Wilcox, Matthew, Brodlie, Malcolm, Pearson, Jeffrey and Ward, Christopher (2022) Exposure to bile and gastric juice can impact the aerodigestive microbiome in people with cystic fibrosis. Scientific Reports, 12 (1). p. 11114. ISSN 2045-2322

Terry, Jefferson, Hockney, Rochelle, Orr, Caroline H., Waring, Gareth J., Christiaens, Inge, Taylor, Gillian, Cummings, Stephen, Robson, Stephen C. and Nelson, Andrew (2022) Formalin-Fixed Paraffin-Embedded (FFPE) samples are not a beneficial replacement for frozen tissues in fetal membrane microbiota research. PLoS ONE, 17 (3). e0265441. ISSN 1932-6203

Deary, Michael, Ekumankama, Chinedu C. and Cummings, Stephen (2022) Structural Selectivity of PAH Removal Processes in Soil, and the Effect of Metal Co-Contaminants. Environments, 9 (2). p. 23. ISSN 2076-3298

Embleton, Nicholas, Berrington, Janet, Cummings, Stephen, Dorling, Jon, Ewer, Andrew, Frau, Alessandra, Juszczak, Edmund, Kirby, John, Lamb, Christopher, Lanyon, Clare, Lett, Lauren, McGuire, William, Probert, Christopher, Rushton, Stephen, Shirley, Mark, Stewart, Christopher and Young, Gregory R. (2021) Lactoferrin impact on gut microbiota in preterm infants with late-onset sepsis or necrotising enterocolitis: the MAGPIE mechanisms of action study. Efficacy and Mechanism Evaluation, 8 (14). pp. 1-88. ISSN 2050-4365

Marrs, Emma C.L., Varadi, Linda, Bedernjak, Alexandre F., Day, Kathryn M., Gray, Mark, Jones, Amanda, Cummings, Stephen, Anderson, Rosaleen J. and Perry, John D. (2020) Phosphonopeptides Revisited, in an Era of Increasing Antimicrobial Resistance. Molecules, 25 (6). p. 1445. ISSN 1420-3049

Deary, Michael, Ekumankama, Chinu and Cummings, Stephen (2018) Effect of lead, cadmium, and mercury co-contaminants on biodegradation in PAH-polluted soils. Land Degradation & Development, 29 (6). pp. 1583-1594. ISSN 1085-3278

Powell, Jason, Garnett, James, Mather, Michael W., Cooles, Faye A. H., Nelson, Andrew, Verdon, Bernard, Scott, Jon, Jiwa, Kasim, Ruchaud-Sparagano, Marie-Hélène, Cummings, Stephen, Perry, John, Wright, Stephen, Wilson, Janet, Pearson, Jeffrey, Ward, Chris and Simpson, A. John (2018) Excess Mucin Impairs Subglottic Epithelial Host Defense in Mechanically Ventilated Patients. American Journal of Respiratory and Critical Care Medicine. ISSN 1073-449X

Stewart, Christopher, Embleton, Nicholas, Marrs, Emma, Smith, Daniel, Fofanova, Tatiana, Nelson, Andrew, Skeath, Tom, Perry, John, Petrosino, Joseph, Berrington, Janet and Cummings, Stephen (2017) Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls. Microbiome, 5 (1). p. 75. ISSN 2049-2618

Stewart, Christopher, Embleton, Nicholas, Clements, Elizabeth, Luna, Pamela, Smith, Daniel, Fofanova, Tatiana, Nelson, Andrew, Taylor, Gillian, Orr, Caroline, Petrosino, Joseph, Berrington, Janet and Cummings, Stephen (2017) Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants. Frontiers in Microbiology, 8. p. 1008. ISSN 1664-302X

Young, Gregory, Smith, Darren, Embleton, Nicholas, Berrington, Janet, Schwalbe, Ed, Cummings, Stephen, van der Gast, Christopher and Lanyon, Clare (2017) Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis. Frontiers in Cellular and Infection Microbiology, 7. p. 237. ISSN 2235-2988

Embleton, Nicholas, Berrington, Janet, Dorling, Jon, Ewer, Andrew, Juszczak, Edmund, Kirby, John, Lamb, Christopher, Lanyon, Clare, McGuire, William, Probert, Christopher, Rushton, Stephen, Shirley, Mark, Stewart, Christopher and Cummings, Stephen (2017) Mechanisms Affecting the Gut of Preterm Infants in Enteral Feeding Trials. Frontiers in Nutrition, 4. p. 14. ISSN 2296-861X

Stewart, Christopher, Nelson, Andrew, Campbell, Matthew, Walker, Mark, Stevenson, Emma, Shaw, James, Cummings, Stephen and West, Dan (2017) Gut microbiota of Type 1 diabetes patients with good glycaemic control and high physical fitness is similar to people without diabetes: an observational study. Diabetic Medicine, 34 (1). pp. 127-134. ISSN 0742-3071

Stewart, Christopher, Embleton, Nicholas, Marrs, Emma, Smith, Daniel, Nelson, Andrew, Abdulkadir, Bashir, Skeath, Tom, Petrosino, Joseph, Perry, John, Berrington, Janet and Cummings, Stephen (2016) Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease. Microbiome, 4 (1). p. 67. ISSN 2049-2618

Lane, Jonathan P., Stewart, Christopher, Cummings, Stephen and Gennery, Andrew R. (2016) Functional changes in gut microbiota during hematopoietic stem cell transplantation for severe combined immunodeficiency. Journal of Allergy and Clinical Immunology, 138 (2). 622-625.e3. ISSN 0091-6749

Preece, Clair, Wichelhaus, Thomas, Perry, Audrey, Jones, Amanda, Cummings, Stephen, Perry, John, Hogardt, Michael and Land, G. A. (2016) Evaluation of Various Culture Media for Detection of Rapidly Growing Mycobacteria from Patients with Cystic Fibrosis. Journal of Clinical Microbiology, 54 (7). pp. 1797-1803. ISSN 0095-1137

Al-momani, H., Perry, Audrey, Stewart, Christopher, Jones, R., Krishnan, A., Robertson, A. G., Bourke, Stephen, Doe, S., Cummings, Stephen, Anderson, Arlene, Forrest, T., Griffin, S. M., Brodlie, Malcolm, Pearson, J. and Ward, C. (2016) Microbiological profiles of sputum and gastric juice aspirates in Cystic Fibrosis patients. Scientific Reports, 6. p. 26985. ISSN 2045-2322

Abdulkadir, Bashir, Nelson, Andrew, Skeath, Tom, Marrs, Emma, Perry, John, Cummings, Stephen, Embleton, Nicholas, Berrington, Janet and Stewart, Christopher (2016) Routine use of probiotics in preterm infants: longitudinal impact on the microbiome and metabolome. Neonatology, 109 (4). pp. 239-247. ISSN 1661-7800

Deary, Michael, Ekumankama, Chinedu and Cummings, Stephen (2016) Development of a novel kinetic model for the analysis of PAH biodegradation in the presence of lead and cadmium co-contaminants. Journal of Hazardous Materials, 307. pp. 240-252. ISSN 0304-3894

Abdulkadir, Bashir, Nelson, Andrew, Skeath, Tom, Marrs, Emma, Perry, John, Cummings, Stephen, Embleton, Nicholas, Berrington, Janet and Stewart, Christopher (2016) Stool bacterial load in preterm infants with necrotising enterocolitis. Early Human Development, 95. pp. 1-2. ISSN 0378-3782

Preece, Clair, Perry, Audrey, Gray, Bethany, Kenna, Dervla, Jones, Amanda, Cummings, Stephen, Robb, Ali, Thomas, Matthew, Brodlie, Malcolm, O'Brien, Christopher, Bourke, Stephen and Perry, John (2016) A novel culture medium for isolation of rapidly-growing mycobacteria from the sputum of patients with cystic fibrosis. Journal of Cystic Fibrosis, 15 (2). pp. 186-191. ISSN 1569-1993

Skeath, Tom, Stewart, Christopher, Waugh, Sheila, Embleton, Nicholas, Cummings, Stephen and Berrington, Janet (2016) Cytomegalovirus and other common enteric viruses are not commonly associated with NEC. Acta Paediatrica, 105 (1). pp. 50-52. ISSN 1651-2227

Stewart, Christopher, Skeath, Tom, Nelson, Andrew, Fernstad, Sara Johansson, Marrs, Emma, Perry, John, Cummings, Stephen, Berrington, Janet and Embleton, Nicholas (2015) Preterm gut microbiota and metabolome following discharge from intensive care. Scientific Reports, 5. p. 17141. ISSN 2045-2322

Stewart, Christopher, Nelson, Andrew, Treumann, Achim, Skeath, Tom, Cummings, Stephen, Embleton, Nicholas and Berrington, Janet (2015) Metabolomic and proteomic analysis of serum from preterm infants with necrotising entercolitis and late-onset sepsis. Pediatric Research, 79 (3). pp. 425-431. ISSN 0031-3998

Orr, Caroline, Stewart, Christopher, Leifert, Carlo, Cooper, Julia and Cummings, Stephen (2015) Effect of crop management and sample year on abundance of soil bacterial communities in organic and conventional cropping systems. Journal of Applied Microbiology, 119 (1). pp. 208-214. ISSN 1364-5072

Preece, Clair, Perry, Audrey, Jones, Amanda, Cummings, Stephen, Bourke, Stephen and Perry, John (2015) 61 Comparison of two chromogenic media for isolation of Staphylococcus aureus from respiratory samples from patients with cystic fibrosis [POSTER]. Journal of Cystic Fibrosis, 14 (S1). S73. ISSN 1569-1993

Lane, Jonathan, Stewart, Christopher, Cummings, Stephen and Gennery, Andrew (2015) Gut microbiome variations during hematopoietic stem cell transplant in severe combined immunodeficiency. Journal of Allergy and Clinical Immunology, 135 (6). pp. 1654-1656. ISSN 0091-6749

Stewart, Christopher and Cummings, Stephen (2015) Gut bacteria and necrotizing enterocolitis: cause or effect? Trends in Microbiology, 23 (6). pp. 332-333. ISSN 0966-842X

Zarakolu, Pinar, Day, Kathryn, Sidjabat, Hanna, Kamolvit, Witchuda, Lanyon, Clare, Cummings, Stephen, Paterson, David, Akova, Murat and Perry, John (2015) Evaluation of a new chromogenic medium, chromID OXA-48, for recovery of carbapenemase-producing Enterobacteriaceae from patients at a university hospital in Turkey. European Journal of Clinical Microbiology and Infectious Diseases, 34 (3). pp. 519-525. ISSN 0934-9723

Tariq, Mohammad, Everest, Francesca, Cowley, Lauren, de Soyza, Anthony, Holt, Giles, Bridge, Simon, Perry, Audrey, Perry, John, Bourke, Stephen, Cummings, Stephen, Lanyon, Clare, Barr, Jeremy and Smith, Darren (2015) A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients. Frontiers in Microbiology, 6 (97). ISSN 1664-302X

Berrington, Janet, Cummings, Stephen and Embleton, Nicholas (2014) The Nasopharyngeal Microbiota: An important window of opportunity. American Journal of Respiratory and Critical Care Medicine, 190 (3). pp. 246-248. ISSN 1073-449X

Berrington, Janet, Stewart, Christopher, Cummings, Stephen and Embleton, Nicholas (2014) The neonatal bowel microbiome in health and infection. Current Opinion in Infectious Diseases, 27 (3). pp. 236-243. ISSN 0951-7375

Purcell, Paul, Jary, Hannah, Perry, Audrey, Perry, John, Stewart, Christopher, Nelson, Andrew, Lanyon, Clare, Smith, Darren, Cummings, Stephen and de Soyza, Anthony (2014) Polymicrobial airway bacterial communities in adult bronchiectasis patients. BMC Microbiology, 14. ISSN 1471-2180

Berrington, Janet, Hearn, Richard, Hall, C., Stewart, Christopher, Cummings, Stephen and Embleton, Nicholas (2014) Proportionate reduction in uncertainty of late onset infection in preterm infants by neutrophil CD64 measurement. Fetal & Pediatric Pathology, 33 (1). pp. 16-22. ISSN 1551-3815

Stewart, Christopher, Marrs, Emma, Nelson, Andrew, Lanyon, Clare, Perry, John, Embleton, Nicholas, Cummings, Stephen and Berrington, Janet (2013) Development of the preterm gut microbiome in twins at risk of necrotising enterocolitis and sepsis. PLoS ONE, 8 (8). e73465. ISSN 1932-6203

Berrington, Janet, Stewart, Christopher, Embleton, Nicholas and Cummings, Stephen (2013) Gut microbiota in preterm infants: assessment and relevance to health and disease. Archives of Disease in Childhood Fetal & Neonatal Edition, 98 (4). F298-F303. ISSN 1359-2998

Embleton, Nicholas, Berrington, Janet, McGuire, William, Stewart, Christopher and Cummings, Stephen (2013) Lactoferrin: Antimicrobial activity and therapeutic potential. Seminars in Fetal and Neonatal Medicine, 18 (3). pp. 143-149. ISSN 1744-165X

Nelson, Andrew, Perry, Audrey, Perry, John, Bourke, Stephen, Cummings, Stephen and de Soyza, Anthony (2013) Determining the influence of environmental and patient specific factors on the polymicrobial communities of the cystic fibrosis airway. Antonie van Leeuwenhoek Journal of Microbiology, 103 (4). pp. 755-762. ISSN 1572-9699

Day, Kathryn, Ali, Shamshad, Ali Mirza, Irfin, Sidjabat, Hanna, Silvey, Anna, Lanyon, Clare, Cummings, Stephen, Abbasi, Shahid, Raza, Muhammad, Paterson, David and Perry, John (2013) Prevalence and molecular characterization of Enterobacteriaceae producing NDM-1 carbapenemase at a military hospital in Pakistan and evaluation of two chromogenic media. Diagnostic Microbiology and Infectious Disease, 75 (2). pp. 187-191. ISSN 0732-8893

Stewart, Christopher, Nelson, Andrew, Scribbins, David, Marrs, Emma, Lanyon, Clare, Perry, John, Embleton, Nicholas, Cummings, Stephen and Berrington, Janet (2013) Bacterial and fungal viability in the preterm gut: NEC and sepsis. Archives of Disease in Childhood - Fetal and Neonatal Edition, 98 (4). F298-F303. ISSN 1359-2998

Day, Kathryn, Pike, Rachel, Winstanley, Trevor, Lanyon, Clare, Cummings, Stephen, Raza, Muhammad, Woodford, Neil and Perry, John (2013) Use of Faropenem as an Indicator of Carbapenemase Activity in the Enterobacteriaceae. Journal of Clinical Microbiology, 51 (6). pp. 1881-1886. ISSN 0095-1137

Orr, Caroline, Cooper, Julia, Leifert, Carlo and Cummings, Stephen (2012) Impacts of organic and conventional crop management on diversity and activity of free-living nitrogen fixing bacteria and total bacteria are subsidiary to temporal effects. PLoS ONE, 7 (12). e52891. ISSN 1932-6203

Stewart, Christopher, Marrs, Emma, Magorrian, Sinead, Nelson, Andrew, Lanyon, Clare, Perry, John, Embleton, Nicholas, Cummings, Stephen and Berrington, Janet (2012) The preterm gut microbiota: changes associated with necrotizing enterocolitis and infection. Acta Paediatrica, 101 (11). pp. 1121-1127. ISSN 1651-2227

Nelson, Andrew, de Soyza, Anthony, Perry, John, Sutcliffe, Iain and Cummings, Stephen (2012) Polymicrobial challenges to Koch's postulates: ecological lessons from the bacterial vaginosis and cystic fibrosis microbiomes. Innate Immunity, 18 (5). pp. 774-783. ISSN 1753-4267

Wilkinson, Kathryn, Winstanley, Trevor, Lanyon, Clare, Cummings, Stephen, Raza, Muhammad and Perry, John (2012) Comparison of four chromogenic culture media for carbapenemase-producing enterobacteriaceae. Journal of Clinical Microbiology, 50 (9). pp. 3102-3104. ISSN 1098-660X

Lim, Jesmine, Woodward, John, Tulaczyk, Slawek, Christoffersen, Poul and Cummings, Stephen (2011) Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada. Antonie van Leeuwenhoek, 99 (2). pp. 423-430. ISSN 0003-6072

Orr, Caroline, James, Angela, Leifert, Carlo, Cooper, Julia and Cummings, Stephen (2011) Diversity and Activity of Free-Living Nitrogen-Fixing Bacteria and Total Bacteria in Organic and Conventionally Managed Soils. Applied and Environmental Microbiology, 77 (3). pp. 911-919. ISSN 0099-2240

Nelson, Andrew, Bourke, Stephen, Perry, John, de Soyza, Anthony and Cummings, Stephen (2011) P166 Temporal dynamics of polymicrobial communities in the lower respiratory tract of patients with cystic fibrosis. Thorax, 66 (4). A135-A135. ISSN 0040-6376

Purcell, Paul, Nelson, Andrew, Fisher, Andrew, Perry, John, de Soyza, Anthony and Cummings, Stephen (2011) S19 Molecular fingerprinting and metagenomic analysis reveals a polymicrobial element in patients with chronic obstructive pulmonary disease. Thorax, 66 (Suppl). A11-A12. ISSN 0040-6376

Nelson, Andrew, de Soyza, Anthony, Bourke, Stephen, Perry, John and Cummings, Stephen (2010) Assessment of sample handling practices on microbial activity in sputum samples from patients with cystic fibrosis. Letters in Applied Microbiology, 51 (3). pp. 272-277. ISSN 0266-8254

Vettori, Lorenzo, Felici, Cristiana, Russo, Anna, Morini, Stefano, Cummings, Stephen and Toffanin, Annita (2010) Biocontrol activity of Azospirillum brasilense Sp245 against Rhizoctonia solani by in vitro/in vivo tests, DGGE analysis. Journal of Biotechnology, 150. p. 503. ISSN 01681656

Cummings, Stephen, Nelson, Andrew, Purcell, Paul, de Soyza, Anthony, Bourke, Stephen and Perry, John (2010) S23 A comparative study of polymicrobial diversity in CF and non-CF bronchiectasis. Thorax, 65 (Suppl). A13-A14. ISSN 0040-6376

Bamborough, Lisa and Cummings, Stephen (2009) The impact of zinc and lead concentrations and seasonal variation on bacterial and actinobacterial community structure in a metallophytic grassland soil. Folia Microbiologica, 54 (4). pp. 327-334. ISSN 0015-5632

Bamborough, Lisa and Cummings, Stephen (2009) The impact of increasing heavy metal stress on the diversity and structure of the bacterial and actinobacterial communities of metallophytic grassland soil. Biology and Fertility of Soils, 45 (3). pp. 273-280. ISSN 0178-2762

Rahman, M. D. Obaidur, Pfitzenmaier, Markus, Pester, Oxana, Morath, Siegfried, Cummings, Stephen, Hartung, Thomas and Sutcliffe, Iain (2009) Macroamphiphilic components of thermophilic actinomycetes: identification of lipoteichoic acid in thermobifida fusca. Journal of Bacteriology, 191 (1). pp. 152-160. ISSN 0021-9193

Tang, Catherine, Koh, Wee Ki Koh, Bungard, Ralph, Jones, Alex, Morton, James, Weir, Bevan, Cummings, Stephen, Sprent, Janet, James, Euan and Andrews, Mitchell (2009) 16S rRNA characterisation of bacterial isolates from Carmichaelia australis and C. corrugate, New Zealand native legumes and assessment of their ability to produce functional nodules on five Carmichaelia species. Aspects of Applied Biology 98: Positive plant microbial interactions in relation to plant performance and ecosystem function (98). pp. 203-206. ISSN 0265-1491

Koh, Wee Ki Koh, Tang, Catherine, Cummings, Stephen, James, Euan, Sprent, Janet and Andrews, Mitchell (2009) Bacteria isolated from Acosmium nitens and Campsiandra laurifolia nodules are characterised as Burkholderia but it is not known if they can produce functional nodules. Aspects of Applied Biology 98: Positive plant microbial interactions in relation to plant performance and ecosystem function (98). pp. 179-182. ISSN 0265-1491

Cummings, Stephen, Gyaneshwar, Prasad, Vinuesa, Pablo, Farruggia, Frank, Andrews, Mitchell, Humphry, David, Elliott, Geoffrey, Nelson, Andrew, Orr, Caroline, Pettitt, Deborah, Shah, Gopit, Santos, Scott, Krishnan, Hari, Odee, David, Moreira, Fatima, Sprent, Janet, Young, J. Peter and James, Euan (2009) Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology, 11 (10). pp. 2510-2525. ISSN 1462-2912

Rahman, M. D. Obaidur, Cummings, Stephen and Sutcliffe, Iain (2009) Phenotypic variation in Streptomyces sp. DSM 40537, a lipoteichoic acid producing actinomycete. Letters in Applied Microbiology, 48 (2). pp. 226-229. ISSN 0266-8254

Cummings, Stephen (2009) The application of plant growth promoting rhizobacteria (PGPR) in low input and organic cultivation of graminaceous crops: potential and problems. Environmental Biotechnology, 5 (2). pp. 43-50. ISSN 2391-6095

Rahman, M. D. Obaidur, Cummings, Stephen, Harrington, Dean and Sutcliffe, Iain (2008) Methods for the bioinformatic identification of bacterial lipoproteins encoded in the genomes of gram-positive bacteria. World Journal of Microbiology and Biotechnology, 24 (11). pp. 2377-2382. ISSN 0959-3993

Baxter, Joanne and Cummings, Stephen (2008) The degradation of the herbicide bromoxynil and its impact on bacterial diversity in a top soil. Journal of Applied Microbiology, 104 (6). pp. 1605-1616. ISSN 1364-5072

Hinshaw, Kim, Simpson, S., Cummings, Stephen, Hildreth, Anthony and Thornton, Jim (2008) A randomised controlled trial of early versus delayed oxytocin augmentation to treat primary dysfunctional labour in nulliparous women. BJOG : An International Journal Of Obstetrics & Gynaecology, 115 (10). pp. 1289-1296. ISSN 1470-0328

Humphry, David, Cummings, Stephen, Andrews, Mitchell, Santos, Scott, James, Euan, Vinogradova, Lioubov and Reis, Veronica (2007) Phylogenetic assignment and mechanism of action of a crop growth promoting Rhizobium radiobacter strain used as a biofertiliser on graminaceous crops in Russia. Antonie van Leeuwenhoek, 91 (2). pp. 105-113. ISSN 0003-6072

Baxter, Joanne and Cummings, Stephen (2006) The application of the herbicide bromoxynil to a model soil-derived bacterial community: Impact on degradation and community structure. Letters in Applied Microbiology, 43 (6). pp. 659-665. ISSN 0266-8254

Baxter, Joanne and Cummings, Stephen (2006) The current and future applications of microorganism in the bioremediation of cyanide contamination. Antonie van Leeuwenhoek, 90 (1). pp. 1-17. ISSN 0003-6072

Baxter, Joanne and Cummings, Stephen (2006) The impact of bioaugmentation on metal cyanide degradation and soil bacteria community structure. Biodegradation, 17 (3). pp. 207-217. ISSN 0923 9820

Baxter, Joanne, Garton, Natalie and Cummings, Stephen (2006) The impact of acrylonitrile and bioaugmentation on the biodegradation activity and bacterial community structure of a topsoil. Folia Microbiologica, 51 (6). pp. 591-597. ISSN 0015 5632

Humphry, David, Black, Gary and Cummings, Stephen (2003) Reclassification of' 'Pseudomonas fluorescens subsp. cellulosa' NCIMB 10462 (Ueda et al. 1952) as Cellvibrio japonicus sp. nov. and revival of Cellvibrio vulgaris sp. nov., nom. rev. and Cellvibrio fulvus sp. nov., nom. rev. International Journal of Systematic and Evolutionary Microbiology, 53 (2). pp. 393-400. ISSN 1466-5034

Cummings, Stephen, Black, Gary, George, A. and Humphry, David (2001) Flavobacterium frigidarium sp nov., an aerobic psychrophilic, xylanolytic, and laminarinolytic bacterium from Antarctica. International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1235-1243. ISSN 1466-5034

Cummings, Stephen, Brown, Geoffrey and Sutcliffe, Iain (2001) Reclassification of [pseudomonas] doudoroffii (Baumann et al. 1983) into the genus Oceanomonas gen.nov. as Oceanomonas doudoroffii comb.nov. and description of a phenol-degrading bacterium from estuarine water as Oceanomonas baumannii sp.nov. International Journal of Systematic and Evolutionary Microbiology, 51 (1). pp. 67-72. ISSN 1466-5034

Book Section

Young, Greg, Zalewski, Stefan, Cummings, Stephen and Lanyon, Clare (2017) Development of the neonatal microbiota. In: Microbiota in health and disease: from pregnancy to childhood. Wageningen Academic Publishers, Wageningen, pp. 39-56. ISBN 9789086862948

Cummings, Stephen and Orr, Caroline (2011) The role of plant growth promoting rhizobacteria in sustainable and low-input graminaceous crop production. In: Plant Growth and Health Promoting Bacteria. Microbiology Monographs, 18 . Springer, London, pp. 297-315. ISBN 978-3642136115

Cummings, Stephen and Bamborough, Lisa (2008) The impact of long term heavy metal contamination on bacterial communities in metallphytic grassland soils. In: Soil Contamination Research Trends. Nova Publishers, Hauppauge, New York, pp. 73-107. ISBN 978-1604563191

Cummings, Stephen and Bamborough, Lisa (2008) The structure and stability of microbial communities in metallophytic grassland soils that have been subjected to long term contamination by heavy metals. In: Microbial Ecology Research Trends. Nova Science Publishers, New York, pp. 169-205. ISBN 978-1-60456-179-1

Conference or Workshop Item

Everest, Francesca, Tariq, Mohammad, Holt, Giles, Lodge, John, Perry, Audrey, Perry, John, Bourke, Stephen, Lanyon, Clare, Cummings, Stephen, de Soyza, Anthony and Smith, Darren (2016) Mapping the progression and evolution of chronic respiratory diseases using mixed temperate phage communities isolated from Pseudomonas aeruginosa. In: 21st Biennial Evergreen International Phage Meeting, 2nd - 7th August 2015, Washington, USA.

Everest, Francesca, Tariq, Mohammad, Holt, Giles, Lodge, John, Perry, Audrey, Perry, John, Bourke, S., Lanyon, Clare, Cummings, Stephen, de Soyza, Anthony and Smith, Darren (2016) Metabolite and metabolism characterisation of Pseudomonas aeruginosa pellicle formation and the impact of converting temperate phages. In: EMBO Conference - Viruses of Microbes 2016, 18th - 22nd July 2016, Liverpool, UK.

Preece, Clair, Perry, Audrey, Jones, Amanda, Cummings, Stephen, Robb, Ali, Thomas, Matthew, Brodlie, Malcolm, O'Brien, Christopher, Bourke, Stephen and Perry, John (2015) Comparison of various culture media for the isolation of non-tuberculous mycobacteria from respiratory samples. In: The 29th Annual North American Cystic Fibrosis Conference, 8 - 10 October 2015, Phoenix.

Tariq, Mohammad, Holt, Giles, Everest, Francesca, Cowley, Lauren, Lodge, John, Perry, Audrey, Perry, John, Bourke, Stephen, Lanyon, Clare, Cummings, Stephen, Barr, Jeremy, de Soyza, Anthony and Smith, Darren (2015) Temperate bacteriophages adding functionality and complexity to an ever evolving bacterial host. In: 21st Biennial Evergreen International Phage Meeting, 2nd - 7th August 2015, Washington, USA.

Tariq, Mohammad, Holt, Giles, Everest, Francesca, de Soyza, Anthony, Perry, Audrey, Perry, John, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2014) Characterising temperate bacteriophages induced from Burkholderia Cepacia Complex, originating from the lungs of Cystic Fibrosis patients. In: Viruses of microbes: Structure and function, from molecules to communities, 14 - 18 July, 2014, Zurich, Switzerland.

Marrs, Emma, Jones, Amanda, Cummings, Stephen and Perry, John (2014) Demonstration of earlier detection of Salmonella species from stool samples by using chromogenic media. In: ESCMID: European Society of Clinical Microbiology and Infectious Diseases, 10-13 May 2014, Barcelona, Spain.

Tariq, Mohammad, Everest, Francesca, de Soyza, Anthony, Perry, Audrey, Perry, John, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2014) Characterising temperate bacteriophage induced from Burkholderia Cepacia Complex isolates, originating from the lungs of Cystic Fibrosis patients. In: Society for General Microbiology Annual Conference, 14 - 17 April 2014, Liverpool, UK.

Everest, Francesca, Tariq, Mohammad, Wilson, Rhys, de Soyza, Anthony, Perry, Audrey, Perry, John, Bourke, Stephen, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2014) The evolution of temperate bacteriophages of Pseudomonas aeruginosa and mapping their additive effect in colonising the chronic lung. In: Viruses of microbes: Structure and function, from molecules to communities, 14 - 18 July, 2014, Zurich, Switzerland.

Everest, Francesca, Tariq, Mohammad, de Soyza, Anthony, Perry, Audrey, Perry, John, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2014) The influence of temperate phage on Pseudomonas aeruginosa and their effect on Chronic Respiratory Disease sufferers. In: Society for General Microbiology Annual Conference, 14 - 17 April 2014, Liverpool, UK.

Everest, Francesca, Tariq, Mohammad, de Soyza, Anthony, Perry, Audrey, Perry, John, Bourke, Stephen, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2013) Characterising the impact of bacterial viruses of Pseudomonas aeruginosa isolated from Cystic Fibrosis patients. In: Society for General Microbiology Autumn Conference, 2-4 September 2013, Sussex, UK.

Tariq, Mohammad, Everest, Francesca, Kahn, A., de Soyza, Anthony, Bulmer, D., Perry, Audrey, Perry, John, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2013) Comparison of temperate bacteriophages isolated from Pseudomonas aeruginosa isolated from non-Cystic Fibrosis Bronchiectasis patients. In: Society for General Microbiology Autumn Conference, 2-4 September 2013, Sussex, UK.

Kinghan, S., Everest, Francesca, de Soyza, Anthony, Perry, Audrey, Perry, John, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2013) Does phage subversion by temperate bacteriophages alter host bacterial physiology. In: Society for General Microbiology Autumn Conference, 2-4 September 2013, Sussex, UK.

Everest, Francesca, Tariq, Mohammad, de Soyza, Anthony, Perry, Audrey, Perry, John, Bourke, Stephen, Khan, A., Cummings, Stephen, Lanyon, Clare and Smith, Darren (2013) The impact of temperate bacterial viruses on the microbiota of chronic respiratory disease. In: Phages 2013, 10 - 12 September 2013, Oxford, UK.

Everest, Francesca, Tariq, Mohammad, de Soyza, Anthony, Perry, Audrey, Perry, John, Bourke, Stephen, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2013) Characterising the temperate bacteriophage of Pseudomonas aeruginosa isolated from a Cystic Fibrosis background. In: Cystic Fibrosis Conference, 2013, Liverpool, UK.

Roszniowski, Bartosz, Holt, Giles, de Soyza, Anthony, Perry, Audrey, Perry, John, Cummings, Stephen, Lanyon, Clare and Smith, Darren (2013) Spontaneous temperate phage induction as evolutionary selection in host Pseudomonas aeruginosa isolated from cystic fibrosis and non-cystic fibrosis bronchiectasis patients. In: Society for General Microbiology Autumn Conference, 2-4 September 2013, Sussex, UK.

Lim, Jesmine, Cummings, Stephen, Woodward, John and Jones, Amanda (2011) Characterisation of the prokaryotic community of Lake Suigetsu, Japan: towards a novel paleoenvironment research biomarker. In: North East Post-graduate Research Conference, 21 October 2011, Newcastle University, Newcastle upon Tyne.

Lim, Jesmine, Cummings, Stephen, Jones, Amanda, Woodward, John and Nakagawa, Takeshi (2011) Characterization of the prokaryotic community of Lake Suigetsu, Japan: towards a novel palaeoenvironment. In: Spring Meeting of the Society for General Microbiology, 11 - 14 April 2011, Harrogate International Centre, UK.

Lim, Jesmine, Cummings, Stephen, Woodward, John and Jones, Amanda (2011) Culture Dependent Determination of the Prokaryotic Community of Lake Suigetsu, Japan: towards a novel palaeoenvironment research biomarker. In: 16th International Symposium on the Biology of Actinomycetes, 11 - 15 December 2011, Puerto Vallarta, Mexico.

Cummings, Stephen and Sutcliffe, Iain (2008) Using bioinformatics to explore ambiguity in datasets in order to develop critical thinking in biological education. In: BioEd Symposium, 24-28 June 2008, University of Burgundy.

Book

Cummings, Stephen (2010) Bioremediation: methods and protocols. Methods in Molecular Biology, 599 . Humana Press, New York, USA. ISBN 9781607614388