Items where Author is "James, Katherine"

Article

James, Katherine, Alsobhe, Aoesha, Cockell, Simon J., Wipat, Anil and Pocock, Matthew (2022) Integration of probabilistic functional networks without an external Gold Standard. BMC Bioinformatics, 23 (1). p. 302. ISSN 1471-2105

James, Katherine and Munoz, Jose (2022) Computational Network Inference for Bacterial Interactomics. mSystems, 7 (2). e01456-21. ISSN 2379-5077

Olson, Peter D., Tracey, Alan, Baillie, Andrew, James, Katherine, Doyle, Stephen R., Buddenborg, Sarah K., Rodgers, Faye H., Holroyd, Nancy and Berriman, Matt (2020) Complete representation of a tapeworm genome reveals chromosomes capped by centromeres, necessitating a dual role in segregation and protection. BMC Biology, 18 (1). p. 165. ISSN 1741-7007

Brown, Bradley, Bartley, Bryan, Beal, Jacob, Bird, Jasmine E., Goñi-Moreno, Ángel, McLaughlin, James Alastair, Mısırlı, Göksel, Roehner, Nicholas, Skelton, David James, Poh, Chueh Loo, Ofiteru, Irina Dana, James, Katherine and Wipat, Anil (2020) Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL). ACS Synthetic Biology, 9 (9). pp. 2410-2417. ISSN 2161-5063

James, Katherine and Olson, Peter D. (2020) The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma. BMC Genomics, 21 (1). p. 346. ISSN 1471-2164

Kenny, Nathan J., McCarthy, Shane A., Dudchenko, Olga, James, Katherine, Betteridge, Emma, Corton, Craig, Dolucan, Jale, Mead, Dan, Oliver, Karen, Omer, Arina D., Pelan, Sarah, Ryan, Yan, Sims, Ying, Skelton, Jason, Smith, Michelle, Torrance, James, Weisz, David, Wipat, Anil, Aiden, Erez L., Howe, Kerstin and Williams, Suzanne T. (2020) The gene-rich genome of the scallop Pecten maximus. GigaScience, 9 (5). giaa037. ISSN 2047-217X

Riaz-Bradley, Amber, James, Katherine and Yuzenkova, Yulia (2020) High intrinsic hydrolytic activity of cyanobacterial RNA polymerase compensates for the absence of transcription proofreading factors. Nucleic Acids Research, 48 (3). pp. 1341-1352. ISSN 0305-1048

Tarn, Jessica R, Howard-Tripp, Nadia, Lendrem, Dennis W, Mariette, Xavier, Saraux, Alain, Devauchelle-Pensec, Valerie, Seror, Raphaele, Skelton, Andrew J, James, Katherine, McMeekin, Peter, Al-Ali, Shereen, Hackett, Kate, Lendrem, B Clare, Hargreaves, Ben, Casement, John, Mitchell, Sheryl, Bowman, Simon J, Price, Elizabeth, Pease, Colin T, Emery, Paul, Lanyon, Peter, Hunter, John, Gupta, Monica, Bombardieri, Michele, Sutcliffe, Nurhan, Pitzalis, Costantino, McLaren, John, Cooper, Annie, Regan, Marian, Giles, Ian, Isenberg, David, Saravanan, Vadivelu, Coady, David, Dasgupta, Bhaskar, McHugh, Neil, Young-Min, Steven, Moots, Robert, Gendi, Nagui, Akil, Mohammed, Griffiths, Bridget, Johnsen, Svein J A, Norheim, Katrine B, Omdal, Roald, Stocken, Deborah, Everett, Colin, Fernandez, Catherine, Isaacs, John D, Gottenberg, Jacques-Eric, Ng, Wan-Fai, Devauchelle-Pensec, Valerie, Dieude, Philippe, Dubost, Jean Jacques, Fauchais, Anne-Laure, Goeb, Vincent, Hachulla, Eric, Larroche, Claire, Le Guern, Véronique, Morel, Jacques, Perdriger, Aleth, Puéchal, Xavier, Rist, Stephanie, Sen, Damien, Sibilia, Jean, Vittecoq, Olivier, Benessiano, Joelle, Tubiana, Sarah, Inamo, Karine, Gaete, Stanie, Batouche, Djilali, Molinari, Domitille, Randrianandrasana, Mickael, Pane, Isabelle, Abbe, Adeline, Baron, Gabriel, Ravaud, Philippe, Gottenberg, Jacques-Eric, Ravaud, Philippe, Puéchal, Xavier, Le Guern, Véronique, Sibilia, Jean, Goeb, Vincent, Larroche, Claire, Dubost, Jean-Jacques, Rist, Stéphanie, Saraux, Alain, Devauchelle-Pensec, Valérie, Morel, Jacques, Hayem, Gilles, Hatron, Pierre, Perdriger, Aleth, Sene, Damien, Zarnitsky, Charles, Batouche, Djilali, Furlan, Valérie, Benessiano, Joelle, Perrodeau, Elodie, Seror, Raphaele, Mariette, Xavier, Brown, S, Navarro, N Coy, Pitzalis, C, Emery, P, Pavitt, S, Gray, J, Hulme, C, Hall, F, Busch, R, Smith, P, Dawson, L, Bombardieri, M, Ng, W-F, Pease, C, Price, E, Sutcliffe, N, Woods, C, Ruddock, S, Everett, C, Reynolds, C, Skinner, E, Poveda-Gallego, A, Rout, J, Macleod, I, Rauz, S, Bowman, S, Ng, Wan-Fai, Bowman, Simon J, Griffiths, Bridget, Hall, Frances, Bacaba, Elalaine C, Frankland, Helen, Moots, Robert, Chadravarty, Kuntal, Lamabadusuriya, Shamin, Bombardieri, Michele, Pitzalis, Constantino, Sutcliffe, Nurhan, Breston, Celia, Gendi, Nagui, Culfear, Karen, Riddell, Claire, Hamburger, John, Richards, Andrea, Rauz, Saaeh, Brailsford, Sue, Dasgin, Joanne, Logan, Joanne, Mulherin, Diarmuid, Andrews, Jacqueline, Emery, Pau, McManus, Alison, Pease, Colin, Pickles, David, Booth, Alison, Regan, Marian, Kin, Jon King, Holt, Amanda, Dimitroulas, Theodoros, Kadiki, Lucy, Kaur, Daljit, Kitas, George, Khan, Abdul, Cosier, Tracey, Panthakalam, , Mintrim, Kell, Lloyd, Mark, Moore, Lisa, Gordon, Esther, Lawson, Cathy, Gupta, Monica, Hunter, John, Stirton, Lesley, Ortiz, Gill, Price, Elizabeth, Pelger, Suzannah, Gorman, Claire, Hans, Balinder, Clunie, Gavin, Lane, Suzanne, Rose, Ginny, Cuckow, Sue, Batley, Michael, Einosas, Ruby, Knight, Susan, Symmons, Deborah, Jones, Beverley, Carr, Andrew, Edgar, Suzanne, Figuereido, Francisco, Foggo, Heather, Lendrem, Dennis, Macleod, Iain, Mitchell, Sheryl, Downie, Christine, Tarn, Jessica, Locke, James, Al-Ali, Shereen, Legg, Sarah, Mirza, Kamran, Hargreaves, Ben, Hetherington, Laura, Jones, Adrian, Lanyon, Peter, Muir, Alice, White, Paula, Young-Min, Steven, Pugmire, Susan, Vadivelu, Saravanan, Cooper, Annie, Watkins, Marianne, Field, Anne, Kaye, Stephen, Mewar, Devesh, Medcalf, Patricia, Tomlinson, Pamela, Whiteside, Debbie, McHugh, Neil, Pauling, John, James, Julie, Dowden, Andrea, Akil, Mohammed, McDermott, Jayne, Godia, Olivia, Coady, David, Kidd, Elizabeth, Palmer, Lynne, Li, Charles, Bartrum, Sarah, Mead, De, Dasgupta, Bhaskar, Katsande, Victoria, Long, Pamela, Godia, Olivia, Vermaak, Erin, Turner, Janet, Chandra, Usha, MacKay, Kirsten, Fedele, Stefano, Ferenkeh-Koroma, Ada, Giles, Ian, Isenberg, David, MaConnell, Helena, Ahwiren, Nyarko, Porter, Stephen, Allcoa, Paul and McLaren, John (2019) Symptom-based stratification of patients with primary Sjögren's syndrome: multi-dimensional characterisation of international observational cohorts and reanalyses of randomised clinical trials. The Lancet Rheumatology, 1 (2). e85-e94. ISSN 2665-9913

Johanson, Zerina, Martin, Kyle, Fraser, Gareth and James, Katherine (2019) The Synarcual of the Little Skate, Leucoraja erinacea: Novel Development Among the Vertebrates. Frontiers in Ecology and Evolution, 7. p. 12. ISSN 2296-701X

Ehrmann, Ingrid, Crichton, James H, Gazzara, Matthew R, James, Katherine, Liu, Yilei, Grellscheid, Sushma Nagaraja, Curk, Tomaž, de Rooij, Dirk, Steyn, Jannetta S, Cockell, Simon, Adams, Ian R, Barash, Yoseph and Elliott, David J (2019) An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning. eLife, 8. e39304. ISSN 2050-084X

Olson, Peter D., Zarowiecki, Magdalena, James, Katherine, Baillie, Andrew, Bartl, Georgie, Burchell, Phil, Chellappoo, Azita, Jarero, Francesca, Tan, Li Ying, Holroyd, Nancy and Berriman, Matt (2018) Genome-wide transcriptome profiling and spatial expression analyses identify signals and switches of development in tapeworms. EvoDevo, 9 (1). p. 21. ISSN 2041-9139

Lendrem, Dennis, Tarn, Jessica, Tripp, Nadia, McMeekin, Peter, Skelton, Andrew, James, Katherine, Gillespie, Colin, Al-Ali, Shereen, Hackett, Kate, Lendrem, Clare, Hargreaves, Ben, Casement, John, Mitchell, Sheryl, Bowman, Simon, Price, Elizabeth, Pease, Colin, Emery, Paul, Lanyon, Peter, Hunter, John, Gupta, Monica, Bombardieri, Michele, Sutcliffe, Nurhan, Pitzalis, Costantino, McLaren, John, Cooper, Annie, Regan, Marian, Giles, Ian, Isenberg, David, Vadivelu, Saravanan, Coady, David, Dasgupta, Bhaskar, McHugh, Neil, Young-Min, Steven, Moots, Robert, Gendi, Nagui, Akil, Mohammed, Griffiths, Bridget, Isaacs, John and Ng, Wan-Fai (2018) Gene networks describe symptom based phenotypes in primary Sjogren's syndrome. Clinical and Experimental Rheumatology, 36 (112(3)). S-270. ISSN 0392-856X

Munkley, Jennifer, Maia, Teresa M., Ibarluzea, Nekane, Livermore, Karen E., Vodak, Daniel, Ehrmann, Ingrid, James, Katherine, Rajan, Prabhakar, Barbosa-Morais, Nuno L. and Elliott, David J. (2018) Androgen-dependent alternative mRNA isoform expression in prostate cancer cells. F1000Research, 7. p. 1189. ISSN 2046-1402

James, Katherine, Chipeta, Chimwemwe, Parker, Antony, Harding, Stephen, Cockell, Simon J, Gillespie, Colin S, Hallinan, Jennifer, Barone, Francesca, Bowman, Simon J, Ng, Wan-Fai, Fisher, Benjamin A and UK Primary Sjögren’s Syndrome Registry, (2018) B-cell activity markers are associated with different disease activity domains in primary Sjögren’s syndrome. Rheumatology, 57 (7). pp. 1222-1227. ISSN 1462-0324

James, Katherine, Cockell, Simon J. and Zenkin, Nikolay (2018) Deep sequencing approaches for the analysis of prokaryotic transcriptional boundaries and dynamics. Methods, 120. pp. 76-84. ISSN 1046-2023

Dumusc, Alexandre, Ng, Wan-Fai, James, Katherine, Griffiths, Bridget, Price, Elizabeth, Pease, Colin, Emery, Paul, Lanyon, Peter, Jones, Adrian, Bombardieri, Michele, Sutcliffe, Nurhan, Pitzalis, Costantino, Gupta, Monica, McLaren, John, Cooper, Annie, Giles, Ian, Isenberg, David, Saravanan, Vadivelu, Coady, David, Dasgupta, Bhaskar, McHugh, Neil, Young-Min, Steven, Moots, Robert, Gendi, Nagui, Akil, Mohammed, Barone, Francesca, Fisher, Benjamin, Rauz, Saaeha, Richards, Andrea and Bowman, Simon (2018) Comparison of ESSDAI and ClinESSDAI in potential optimisation of trial outcomes in primary Sjögren's syndrome: examination of data from the UK Primary Sjögren's Syndrome Registry. Swiss Medical Weekly, 148 (5-6). w14588. ISSN 1424-7860

Bezzina, Oriana M., Gallagher, Peter, Mitchell, Sheryl, Bowman, Simon J., Griffiths, Bridget, Hindmarsh, Victoria, Hargreaves, Ben, Price, Elizabeth J., Pease, Colin T., Emery, Paul, Lanyon, Peter, Bombardieri, Michele, Sutcliffe, Nurhan, Pitzalis, Costantino, Hunter, John, Gupta, Monica, McLaren, John, Cooper, Anne M., Regan, Marian, Giles, Ian P., Isenberg, David A., Saravanan, Vadivelu, Coady, David, Dasgupta, Bhaskar, McHugh, Neil J., Young-Min, Steven A., Moots, Robert J., Gendi, Nagui, Akil, Mohammed, MacKay, Kirsten, Ng, W. Fai, Robinson, Lucy J. and James, Katherine (2017) Subjective and Objective Measures of Dryness Symptoms in Primary Sjögren's Syndrome: Capturing the Discrepancy. Arthritis Care & Research, 69 (11). pp. 1714-1723. ISSN 2151-464X

Forrest, David, James, Katherine, Yuzenkova, Yulia and Zenkin, Nikolay (2017) Single-peptide DNA-dependent RNA polymerase homologous to multi-subunit RNA polymerase. Nature Communications, 8 (1). ISSN 2041-1723

Ng, Wan-Fai, Miller, Ariana, Bowman, Simon J., Price, Elizabeth J., Kitas, George D., Pease, Colin, Emery, Paul, Lanyon, Peter, Hunter, John, Gupta, Monica, Giles, Ian, Isenberg, David, McLaren, John, Regan, Marian, Cooper, Annie, Young-Min, Steven A., McHugh, Neil, Vadivelu, Saravanan, Moots, Robert J., Coady, David, MacKay, Kirsten, Dasgupta, Bhaskar, Sutcliffe, Nurhan, Bombardieri, Michele, Pitzalis, Costantino, Griffiths, Bridget, Mitchell, Sheryl, Miyamoto, Samira Tatiyama, Trenell, Michael and James, Katherine (2017) Physical activity but not sedentary activity is reduced in primary Sjögren’s syndrome. Rheumatology International, 37 (4). pp. 623-631. ISSN 0172-8172

Gamba, Pamela, James, Katherine and Zenkin, Nikolay (2017) A link between transcription fidelity and pausing in vivo. Transcription, 8 (2). pp. 99-105. ISSN 2154-1264

James, Katherine, Gamba, Pamela, Cockell, Simon J. and Zenkin, Nikolay (2017) Misincorporation by RNA polymerase is a major source of transcription pausingin vivo. Nucleic Acids Research, 45 (3). pp. 1105-1113. ISSN 0305-1048

Munkley, Jennifer, Vodak, Daniel, Livermore, Karen E., James, Katherine, Wilson, Brian T., Knight, Bridget, Mccullagh, Paul, Mcgrath, John, Crundwell, Malcolm, Harries, Lorna W., Leung, Hing Y., Robson, Craig N., Mills, Ian G., Rajan, Prabhakar and Elliott, David J. (2016) Glycosylation is an Androgen-Regulated Process Essential for Prostate Cancer Cell Viability. EBioMedicine, 8. pp. 103-116. ISSN 2352-3964

James, Katherine, Al-Ali, Shereen, Tarn, Jessica, Cockell, Simon, Gillespie, Colin, Hindmarsh, Victoria, Locke, James, Mitchell, Sheryl, Lendrem, Dennis, Bowman, Simon, Price, Elizabeth, Pease, Colin, Emery, Paul, Lanyon, Peter, Hunter, John, Gupta, Monica, Bombardieri, Michele, Sutcliffe, Nurhan, Pitzalis, Costantino, McLaren, John, Cooper, Annie, Regan, Marian, Giles, Ian, Isenberg, David, Saravanan, Vadivelu, Coady, David, Dasgupta, Bhaskar, McHugh, Neil, Young-Min, Steven, Moots, Robert, Gendi, Nagui, Akil, Mohammed, Griffiths, Bridget, Wipat, Anil, Newton, Julia, Jones, David E., Isaacs, John, Hallinan, Jennifer, Ng, Wan-Fai and Hackett, Kate (2015) A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome. PLoS ONE, 10 (12). e0143970. ISSN 1932-6203

Best, Andrew, James, Katherine, Dalgliesh, Caroline, Hong, Elaine, Kheirolahi-Kouhestani, Mahsa, Curk, Tomaz, Xu, Yaobo, Danilenko, Marina, Hussain, Rafiq, Keavney, Bernard, Wipat, Anil, Klinck, Roscoe, Cowell, Ian G., Cheong Lee, Ka, Austin, Caroline A., Venables, Julian P., Chabot, Benoit, Santibanez Koref, Mauro, Tyson-Capper, Alison and Elliott, David J. (2014) Human Tra2 proteins jointly control a CHEK1 splicing switch among alternative and constitutive target exons. Nature Communications, 5 (1). ISSN 2041-1723

Misirli, Goksel, Wipat, Anil, Mullen, Joseph, James, Katherine, Pocock, Matthew, Smith, Wendy, Allenby, Nick and Hallinan, Jennifer S. (2013) BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology. Journal of Integrative Bioinformatics, 10 (2). ISSN 1613-4516

Report

Skelton, David, Alsobhe, Aoesha, Anastasi, Elisa, Atallah, Christian, Bird, Jasmine, Brown, Bradley, Didon, Dwayne, Gater, Phoenix, James, Katherine, Lennon Jr., David D., McLaughlin, James, Moreland, Pollyanna, Pocock, Matthew, Whitaker, Caroline and Wipat, Anil (2020) Drug repurposing prediction for COVID-19 using probabilistic networks and crowdsourced curation. Working Paper. arXiv. (Submitted)